claude-code - 💡(How to fix) Fix [Bug] Auto mode denies recursive directory deletion despite allowlist in settings.json [1 comments, 2 participants]

[{"error":"Error: NON-FATAL: Lock acquisition failed for /Users/dennis/.local/share/claude/versions/2.1.117 (expected in multi-process scenarios)\n at fn_ (/$bunfs/root/src/entrypoints/cli.js:2754:2177)\n at H98 (/$bunfs/root/src/entrypoints/cli.js:2754:1257)\n at processTicksAndRejections (native:7:39)","timestamp":"2026-04-22T16:14:53.285Z"},{"error":"Error: Plugin MCP server error - mcp-config-invalid: MCP server github invalid: Missing environment variables: GITHUB_PERSONAL_ACCESS_TOKEN\n at aJH (/$bunfs/root/src/entrypoints/cli.js:2754:30499)\n at processTicksAndRejections (native:7:39)","timestamp":"2026-04-22T16:14:53.314Z"},{"error":"Error: Plugin MCP server error - mcp-config-invalid: MCP server github invalid: Missing environment variables: GITHUB_PERSONAL_ACCESS_TOKEN\n at aJH (/$bunfs/root/src/entrypoints/cli.js:2754:30499)\n at async L (/$bunfs/root/src/entrypoints/cli.js:6151:11827)\n at processTicksAndRejections (native:7:39)","timestamp":"2026-04-22T16:14:53.887Z"},{"error":"Error: Plugin MCP server error - mcp-config-invalid: MCP server github invalid: Missing environment variables: GITHUB_PERSONAL_ACCESS_TOKEN\n at aJH (/$bunfs/root/src/entrypoints/cli.js:2754:30499)\n at async G (/$bunfs/root/src/entrypoints/cli.js:6151:11021)\n at processTicksAndRejections (native:7:39)","timestamp":"2026-04-22T16:14:53.887Z"},{"error":"Error: Plugin MCP server error - mcp-config-invalid: MCP server github invalid: Missing environment variables: GITHUB_PERSONAL_ACCESS_TOKEN\n at aJH (/$bunfs/root/src/entrypoints/cli.js:2754:30499)\n at async L (/$bunfs/root/src/entrypoints/cli.js:6151:11827)\n at processTicksAndRejections (native:7:39)","timestamp":"2026-04-22T16:14:54.079Z"},{"error":"Error: Plugin MCP server error - mcp-config-invalid: MCP server github invalid: Missing environment variables: GITHUB_PERSONAL_ACCESS_TOKEN\n at aJH (/$bunfs/root/src/entrypoints/cli.js:2754:30499)\n at async G (/$bunfs/root/src/entrypoints/cli.js:6151:11021)\n at processTicksAndRejections (native:7:39)","timestamp":"2026-04-22T16:14:54.105Z"},{"error":"Error: 429 {"type":"error","error":{"type":"rate_limit_error","message":"This request would exceed your account's rate limit. Please try again later."},"request_id":"req_011CaK8G2DFGRr1Ry77p9ZLR"}\n at generate (/$bunfs/root/src/entrypoints/cli.js:11:54524)\n at makeRequest (/$bunfs/root/src/entrypoints/cli.js:50:4943)\n at processTicksAndRejections (native:7:39)","timestamp":"2026-04-22T16:29:00.527Z"}]

TL;DR

The issue is likely due to missing environment variables, specifically GITHUB_PERSONAL_ACCESS_TOKEN, which is required for the MCP server to function correctly.

Guidance

• Check the environment variables set in the system or project configuration to ensure GITHUB_PERSONAL_ACCESS_TOKEN is properly defined.
• Verify that the settings.json file allows the removal of the .next folder, as mentioned in the bug description.
• Review the error logs to identify any other potential issues that may be contributing to the problem, such as rate limiting errors.
• Consider setting the GITHUB_PERSONAL_ACCESS_TOKEN environment variable manually to test if it resolves the issue.

Notes

The provided error logs suggest that there are multiple issues at play, including missing environment variables and rate limiting errors. Addressing the missing GITHUB_PERSONAL_ACCESS_TOKEN environment variable may resolve the primary issue, but additional troubleshooting may be necessary to fully resolve the problem.

Recommendation

Apply workaround: Set the GITHUB_PERSONAL_ACCESS_TOKEN environment variable manually to test if it resolves the issue, as this is the most direct and likely solution based on the provided error logs.