claude-code - 💡(How to fix) Fix [Bug] Claude Code repeatedly requests permissions and forgets environment variables across sessions

[{"error":"Error: NON-FATAL: Lock acquisition failed for /Users/malcolm.titchmarsh/.local/share/claude/versions/2.1.81 (expected in multi-process scenarios)\n at TET (/$bunfs/root/src/entrypoints/cli.js:2724:2174)\n at fgq (/$bunfs/root/src/entrypoints/cli.js:2724:1318)\n at processTicksAndRejections (native:7:39)","timestamp":"2026-04-19T06:29:51.962Z"},{"error":"Error: Request was aborted.\n at w0T (/$bunfs/root/src/entrypoints/cli.js:1907:8297)\n at next (native:1:11)\n at B29 (/$bunfs/root/src/entrypoints/cli.js:7276:7438)\n at next (native:1:11)\n at c29 (/$bunfs/root/src/entrypoints/cli.js:7281:10008)\n at processTicksAndRejections (native:7:39)","timestamp":"2026-04-20T12:59:48.743Z"},{"error":"AxiosError: timeout of 5000ms exceeded\n at <anonymous> (/$bunfs/root/src/entrypoints/cli.js:79:13364)\n at emit (node:events:92:22)\n at <anonymous> (/$bunfs/root/src/entrypoints/cli.js:78:3321)\n at request (/$bunfs/root/src/entrypoints/cli.js:81:2467)\n at processTicksAndRejections (native:7:39)","timestamp":"2026-04-20T13:27:57.065Z"},{"error":"Error: {"message":"Operation timed out.","originalLine":"138","originalColumn":"156250","line":"138","column":"156250","sourceURL":"/$bunfs/root/src/entrypoints/cli.js","stack":"Error: Operation timed out.\n at <anonymous> (/$bunfs/root/src/entrypoints/cli.js:138:156250)","name":"Error"}\n at error (/$bunfs/root/src/entrypoints/cli.js:2670:27423)\n at <anonymous> (/$bunfs/root/src/entrypoints/cli.js:138:85385)\n at pz4 (/$bunfs/root/src/entrypoints/cli.js:138:85929)\n at <anonymous> (/$bunfs/root/src/entrypoints/cli.js:139:16930)\n at processTicksAndRejections (native:7:39)","timestamp":"2026-04-20T13:27:57.114Z"},{"error":"Error: 1P event logging: 11 events failed to export (code=ECONNABORTED, timeout of 10000ms exceeded)\n at queueFailedEvents (/$bunfs/root/src/entrypoints/cli.js:397:2687)\n at async doExport (/$bunfs/root/src/entrypoints/cli.js:397:1559)\n at processTicksAndRejections (native:7:39)","timestamp":"2026-04-20T13:27:57.166Z"},{"error":"Error: {"message":"Failed to export 11 events (code=ECONNABORTED, timeout of 10000ms exceeded)","originalLine":"397","originalColumn":"1710","line":"397","column":"1710","sourceURL":"/$bunfs/root/src/entrypoints/cli.js","stack":"Error: Failed to export 11 events (code=ECONNABORTED, timeout of 10000ms exceeded)\n at doExport (/$bunfs/root/src/entrypoints/cli.js:397:1710)\n at processTicksAndRejections (native:7:39)","name":"Error"}\n at error (/$bunfs/root/src/entrypoints/cli.js:2670:27423)\n at <anonymous> (/$bunfs/root/src/entrypoints/cli.js:138:85385)\n at pz4 (/$bunfs/root/src/entrypoints/cli.js:138:85929)\n at <anonymous> (/$bunfs/root/src/entrypoints/cli.js:139:17366)\n at processTicksAndRejections (native:7:39)","timestamp":"2026-04-20T13:27:57.171Z"},{"error":"MaxFileReadTokenExceededError: File content (35805 tokens) exceeds maximum allowed tokens (25000). Use offset and limit parameters to read specific portions of the file, or search for specific content instead of reading the whole file.\n at gT9 (/$bunfs/root/src/entrypoints/cli.js:4312:23670)\n at processTicksAndRejections (native:7:39)","timestamp":"2026-04-20T14:06:04.924Z"},{"error":"Error: Request was aborted.\n at makeRequest (/$bunfs/root/src/entrypoints/cli.js:244:3940)\n at processTicksAndRejections (native:7:39)","timestamp":"2026-04-20T14:52:42.618Z"},{"error":"Error: 429 {"type":"error","error":{"type":"rate_limit_error","message":"This request would exceed your account's rate limit. Please try again later."},"request_id":"req_011CaFEamk4XbFEtr3AiTS13"}\n at generate (/$bunfs/root/src/entrypoints/cli.js:205:286312)\n at makeRequest (/$bunfs/root/src/entrypoints/cli.js:244:5435)\n at processTicksAndRejections (native:7:39)","timestamp":"2026-04-20T15:09:33.300Z"},{"…

TL;DR

The most likely fix is to adjust the environment variables and permissions to prevent repeated prompts and timeouts, and to optimize file reading to avoid exceeding the maximum allowed tokens.

Guidance

• Review and adjust environment variables to ensure they are set correctly for tests, reducing the need for repeated prompts.
• Verify permissions for grepping results to prevent permission-related errors and timeouts.
• Optimize file reading by using offset and limit parameters to read specific portions of files, rather than reading entire files and exceeding the maximum allowed tokens (25000).
• Consider implementing retry logic or increasing timeouts to handle temporary connection issues and rate limits.

Example

No specific code example can be provided without more context, but adjusting environment variables might involve setting them in a .env file or through the terminal before running tests.

Notes

The provided error messages and stack traces suggest a variety of issues, including timeouts, connection aborts, and rate limits. Without more specific information about the code and environment, it's challenging to provide a precise solution. The suggestions above aim to address the most apparent issues.

Recommendation

Apply workaround: Adjust environment variables, permissions, and file reading strategies to mitigate the issues described, as the problem seems to stem from configuration and usage rather than a version-specific bug that could be fixed by upgrading.