claude-code - 💡(How to fix) Fix MCP tool calls prompt for permission despite bypass-all permission mode [1 comments, 2 participants]

TL;DR

The issue may be resolved by re-examining the permission settings for MCP tools or checking for any overrides that could be causing the prompts to appear despite the bypass-all mode.

Guidance

• Verify that the bypass all permission mode is correctly applied to MCP tools, as the issue might be due to a misconfiguration or an override.
• Check the documentation for the Claude Code CLI and MCP server tools to see if there are any specific settings or flags that need to be set to enable bypass-all for MCP tools.
• Test the behavior with different MCP tools (e.g., mcp__youtrack__create_issue) to see if the issue is specific to one tool or affects all MCP tools.
• Consider checking the version of the Claude Code CLI and MCP server tools to ensure they are up-to-date, as this could be a known issue that has been fixed in a later version.

Example

No code snippet is provided as the issue seems to be related to configuration or tool behavior rather than code.

Notes

The solution may depend on the specific implementation details of the Claude Code CLI and MCP server tools, which are not fully described in the issue. Additionally, the issue might be specific to the claude-opus-4-6 model or the YouTrack MCP server.

Recommendation

Apply workaround: The best course of action seems to be to investigate and potentially adjust the permission settings or configuration for MCP tools, as the current setup does not seem to respect the bypass-all mode as expected.