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hermes - ✅(Solved) Fix restructure PR 5: move tools/ + top-level modules → hermes_agent/tools/ + hermes_agent/backends/ [2 pull requests, 1 participants]

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NousResearch/hermes-agent#14590•Fetched 2026-04-24 06:16:12
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Fix Action

Fix / Workaround

Top-level modules

  • model_tools.py → hermes_agent/tools/dispatch.py
  • toolsets.py → hermes_agent/tools/toolsets.py
  • toolset_distributions.py → hermes_agent/tools/distributions.py
  • mcp_serve.py → hermes_agent/tools/mcp/serve.py

PR fix notes

PR #14498: refactor: move all source into hermes_agent/ package (PR 1/3)

Description (problem / solution / changelog)

Summary

Consolidates the entire codebase into a single hermes_agent/ Python package. This is PR 1 of 3 in the restructure tracked by #14182 (sub-issue: #14183).

Before: 8 independent packages (agent/, tools/, hermes_cli/, gateway/, acp_adapter/, cron/, plugins/) + 11 top-level modules (run_agent.py, cli.py, model_tools.py, etc.) with unprefixed imports (from agent.prompt_builder import ...).

After: One hermes_agent/ package with organized subpackages. All imports are from hermes_agent.X import ....

Diff breakdown

The diff looks large (+13,057 / -12,287) but ~95% is mechanical one-line import path changes. Here's the breakdown:

CategoryFiles+lines-linesWhat it is
Pure renames7200git mv only — invisible in diff
Renames + import rewrites2192,1092,104Moved files that also had imports rewritten
Tests (not renamed)6499,8149,895Import rewrites + test fixture fixes
Scripts1191436Move map + import rewriter (new files)
Infra + other42226245tui_gateway/, environments/, Dockerfile, AGENTS.md, etc.

Tests dominate because every test file imports from the packages we moved, so every from agent., from tools., from hermes_cli. line was rewritten — plus all patch() and monkeypatch.setattr() target strings. There are more test files (649) than source files (291) because each test imports and mocks multiple modules.

The actual semantic changes (infra, new scripts, .git-blame-ignore-revs) account for ~1,100 lines.

What changed

  • 268 source files moved into hermes_agent/ via git mv (100% similarity preserved for blame)
  • All imports rewritten across 898 files — covers import X, from X import, patch() strings, monkeypatch.setattr(), sys.modules[] keys, importlib.import_module() strings
  • Infrastructure updated — pyproject.toml entry points, Dockerfile, docker/entrypoint.sh, scripts/install.sh, setup-hermes.sh, scripts/install.ps1, web/vite.config.ts, MANIFEST.in, AGENTS.md, nix/checks.nix
  • New subpackage organization:
    • agent/transports/ + provider adapters → hermes_agent/providers/
    • tools/environments/ → hermes_agent/backends/
    • tools/browser_*.py → hermes_agent/tools/browser/
    • tools/mcp_*.py → hermes_agent/tools/mcp/
    • tools/skills_*.py → hermes_agent/tools/skills/
    • tools/file_*.py → hermes_agent/tools/files/
    • tools/*_tool.py (media) → hermes_agent/tools/media/
    • hermes_cli/auth*.py → hermes_agent/cli/auth/
    • hermes_cli/model*.py → hermes_agent/cli/models/
    • hermes_cli/banner.py, colors.py, etc. → hermes_agent/cli/ui/
  • New console script: hermes-skills-sync — decouples shell scripts from internal module layout
  • Zero logic changes — this is purely mechanical file moves + import rewrites

Commit strategy

#CommitPurpose
18bff8bf2Add move map data structure (268 file mappings)
265ca3ba9Pure git mv — all files into hermes_agent/ (100% similarity)
34b163419Rewrite all imports + string references (898 files)
4a1e667b9Fix test regressions from import rewrite (113 test files)
576aebd73Update infrastructure (pyproject, Docker, shell scripts, vite, AGENTS.md)
6ff99611eUpdate Nix files
725072fe6Fix stale references missed by import rewrite
8987962f4Add .git-blame-ignore-revs for restructure commits

Commits 1-2 are separated so git log --follow and git blame work correctly. The git mv commit has 100% similarity on all 268 files. .git-blame-ignore-revs tells git blame (and GitHub) to skip commits 2-3.

Key decisions

DecisionChoiceRationale
plugins/ locationMoved into hermes_agent/plugins/Single package boundary
Layer inversions (agent→cli)Moved as-isPR 1 is mechanical only; fix in follow-up #14278
sys.path hacks in prod codeStrippedAll install paths use editable installs; hacks are redundant
tests/conftest.py sys.pathStripped, added ImportError guardForces proper uv pip install -e '.[all,dev]'
Logger COMPONENT_PREFIXESUpdated to new pathsPreserves hermes logs --component filtering
Process-name matching (gateway)New patterns added alongside oldRunning gateways from pre-upgrade installs still have old cmdline
skills_syncAdded hermes-skills-sync console_scriptDecouples setup-hermes.sh, install.sh, entrypoint.sh from internal layout
Transport discoveryUpdated _discover_transports()Same auto-discovery pattern, new hermes_agent.providers.*_transport paths
Tool registryExtended discover_builtin_tools()Scans browser/, files/, media/, skills/ subpackage directories

Test results

MetricBaseline (pre-restructure)After restructure
Passed14,09914,220 (+121)
Failed6771
Errors7372
Skipped3830

All errors are pre-existing (Callable type annotation bug). The +121 passed is from previously-erroring tests now resolving correctly. No regressions introduced.

Entry points verified

hermes --help          ✅
hermes-agent --help    ✅
hermes-acp --help      ✅
hermes-skills-sync     ✅

Follow-up issues

  • #14278 — Fix layer inversions (agent→cli imports)
  • #14279 — Remove legacy process-name patterns after one release cycle

Directories unchanged (stay at repo root)

skills/, optional-skills/, environments/, tui_gateway/, ui-tui/, web/, website/, docker/, nix/, packaging/, scripts/, tests/, acp_registry/, assets/

Closes #14183

Part of #14182

Changed files

  • .git-blame-ignore-revs (added, +5/-0)
  • AGENTS.md (modified, +64/-73)
  • Dockerfile (modified, +2/-2)
  • MANIFEST.in (modified, +1/-0)
  • datagen-config-examples/run_browser_tasks.sh (modified, +1/-1)
  • datagen-config-examples/web_research.yaml (modified, +1/-1)
  • docker/entrypoint.sh (modified, +1/-1)
  • environments/agent_loop.py (modified, +9/-6)
  • environments/benchmarks/terminalbench_2/terminalbench2_env.py (modified, +3/-3)
  • environments/benchmarks/yc_bench/yc_bench_env.py (modified, +2/-2)
  • environments/hermes_base_env.py (modified, +4/-4)
  • environments/tool_context.py (modified, +4/-4)
  • hermes (modified, +1/-1)
  • hermes_agent/__init__.py (added, +0/-0)
  • hermes_agent/acp/__init__.py (renamed, +0/-0)
  • hermes_agent/acp/__main__.py (renamed, +0/-0)
  • hermes_agent/acp/auth.py (renamed, +1/-1)
  • hermes_agent/acp/entry.py (renamed, +2/-7)
  • hermes_agent/acp/events.py (renamed, +1/-1)
  • hermes_agent/acp/permissions.py (renamed, +0/-0)
  • hermes_agent/acp/server.py (renamed, +14/-14)
  • hermes_agent/acp/session.py (renamed, +7/-7)
  • hermes_agent/acp/tools.py (renamed, +2/-2)
  • hermes_agent/agent/__init__.py (renamed, +0/-0)
  • hermes_agent/agent/context/__init__.py (added, +0/-0)
  • hermes_agent/agent/context/compressor.py (renamed, +4/-4)
  • hermes_agent/agent/context/engine.py (renamed, +0/-0)
  • hermes_agent/agent/context/references.py (renamed, +3/-3)
  • hermes_agent/agent/copilot_acp_client.py (renamed, +2/-2)
  • hermes_agent/agent/display.py (renamed, +6/-5)
  • hermes_agent/agent/file_safety.py (renamed, +1/-1)
  • hermes_agent/agent/image_gen/__init__.py (added, +0/-0)
  • hermes_agent/agent/image_gen/provider.py (renamed, +1/-1)
  • hermes_agent/agent/image_gen/registry.py (renamed, +2/-2)
  • hermes_agent/agent/insights.py (renamed, +2/-2)
  • hermes_agent/agent/loop.py (renamed, +149/-143)
  • hermes_agent/agent/manual_compression_feedback.py (renamed, +0/-0)
  • hermes_agent/agent/memory/__init__.py (added, +0/-0)
  • hermes_agent/agent/memory/manager.py (renamed, +3/-3)
  • hermes_agent/agent/memory/provider.py (renamed, +0/-0)
  • hermes_agent/agent/prompt_builder.py (renamed, +7/-7)
  • hermes_agent/agent/redact.py (renamed, +0/-0)
  • hermes_agent/agent/shell_hooks.py (renamed, +3/-3)
  • hermes_agent/agent/skill_commands.py (renamed, +7/-7)
  • hermes_agent/agent/skill_utils.py (renamed, +4/-3)
  • hermes_agent/agent/subdirectory_hints.py (renamed, +1/-1)
  • hermes_agent/agent/title_generator.py (renamed, +1/-1)
  • hermes_agent/agent/trajectory.py (renamed, +0/-0)
  • hermes_agent/backends/__init__.py (renamed, +1/-1)
  • hermes_agent/backends/base.py (renamed, +6/-6)
  • hermes_agent/backends/daytona.py (renamed, +2/-2)
  • hermes_agent/backends/docker.py (renamed, +6/-6)
  • hermes_agent/backends/file_sync.py (renamed, +3/-3)
  • hermes_agent/backends/local.py (renamed, +8/-8)
  • hermes_agent/backends/managed_modal.py (renamed, +3/-3)
  • hermes_agent/backends/modal.py (renamed, +4/-4)
  • hermes_agent/backends/modal_utils.py (renamed, +3/-3)
  • hermes_agent/backends/singularity.py (renamed, +4/-4)
  • hermes_agent/backends/ssh.py (renamed, +2/-2)
  • hermes_agent/cli/__init__.py (renamed, +0/-0)
  • hermes_agent/cli/auth/__init__.py (added, +0/-0)
  • hermes_agent/cli/auth/auth.py (renamed, +28/-24)
  • hermes_agent/cli/auth/commands.py (renamed, +13/-13)
  • hermes_agent/cli/auth/copilot.py (renamed, +0/-0)
  • hermes_agent/cli/auth/dingtalk.py (renamed, +3/-3)
  • hermes_agent/cli/backup.py (renamed, +2/-2)
  • hermes_agent/cli/claw.py (renamed, +5/-5)
  • hermes_agent/cli/clipboard.py (renamed, +8/-5)
  • hermes_agent/cli/commands.py (renamed, +12/-12)
  • hermes_agent/cli/config.py (renamed, +374/-23)
  • hermes_agent/cli/cron.py (renamed, +9/-10)
  • hermes_agent/cli/debug.py (renamed, +4/-4)
  • hermes_agent/cli/default_soul.py (renamed, +0/-0)
  • hermes_agent/cli/doctor.py (renamed, +26/-28)
  • hermes_agent/cli/dump.py (renamed, +7/-7)
  • hermes_agent/cli/env_loader.py (renamed, +1/-1)
  • hermes_agent/cli/gateway.py (renamed, +44/-32)
  • hermes_agent/cli/hooks.py (renamed, +8/-8)
  • hermes_agent/cli/logs.py (renamed, +2/-2)
  • hermes_agent/cli/main.py (renamed, +167/-171)
  • hermes_agent/cli/mcp_config.py (renamed, +11/-11)
  • hermes_agent/cli/memory_setup.py (renamed, +7/-7)
  • hermes_agent/cli/models/__init__.py (added, +0/-0)
  • hermes_agent/cli/models/codex.py (renamed, +0/-0)
  • hermes_agent/cli/models/models.py (renamed, +23/-23)
  • hermes_agent/cli/models/normalize.py (renamed, +2/-2)
  • hermes_agent/cli/models/switch.py (renamed, +20/-20)
  • hermes_agent/cli/nous_subscription.py (renamed, +8/-8)
  • hermes_agent/cli/pairing.py (renamed, +1/-1)
  • hermes_agent/cli/platforms.py (renamed, +0/-0)
  • hermes_agent/cli/plugins.py (renamed, +13/-13)
  • hermes_agent/cli/plugins_cmd.py (renamed, +22/-22)
  • hermes_agent/cli/profiles.py (renamed, +9/-9)
  • hermes_agent/cli/providers.py (renamed, +3/-3)
  • hermes_agent/cli/repl.py (renamed, +205/-177)
  • hermes_agent/cli/runtime_provider.py (renamed, +12/-12)
  • hermes_agent/cli/setup_wizard.py (renamed, +44/-44)
  • hermes_agent/cli/skills_config.py (renamed, +6/-6)
  • hermes_agent/cli/skills_hub.py (renamed, +30/-30)
  • hermes_agent/cli/timeouts.py (renamed, +2/-2)

PR #14926: refactor: move tools/ and backends to hermes_agent/

Description (problem / solution / changelog)

Summary

Closes #14590.

This is PR 5 of the codebase restructuring plan to move all loose modules into a hermes_agent/ root package.

Changes

  • Moved tools/ to hermes_agent/tools/.
  • Created hermes_agent/backends/ and moved top-level scripts: batch_runner.py, mcp_serve.py, mini_swe_runner.py, model_tools.py, toolsets.py, and toolset_distributions.py.
  • Updated all imports project-wide to use hermes_agent.tools.* and hermes_agent.backends.*.
  • Updated pyproject.toml package discovery and module lists.

This branch is built on top of PR 4 (#14925) and targets main.

Changed files

  • AGENTS.md (modified, +1/-1)
  • CONTRIBUTING.md (modified, +1/-1)
  • acp_adapter/auth.py (modified, +1/-1)
  • acp_adapter/entry.py (modified, +1/-1)
  • acp_adapter/server.py (modified, +8/-8)
  • acp_adapter/session.py (modified, +4/-4)
  • acp_adapter/tools.py (modified, +1/-1)
  • agent/account_usage.py (modified, +2/-2)
  • agent/auxiliary_client.py (modified, +21/-21)
  • agent/context_references.py (modified, +1/-1)
  • agent/credential_pool.py (modified, +10/-10)
  • agent/credential_sources.py (modified, +4/-4)
  • agent/display.py (modified, +4/-4)
  • agent/image_gen_registry.py (modified, +1/-1)
  • agent/memory_manager.py (modified, +1/-1)
  • agent/models_dev.py (modified, +1/-1)
  • agent/prompt_builder.py (modified, +4/-4)
  • agent/shell_hooks.py (modified, +2/-2)
  • agent/skill_commands.py (modified, +4/-4)
  • agent/skill_utils.py (modified, +1/-1)
  • cli.py (modified, +127/-127)
  • environments/agent_loop.py (modified, +5/-5)
  • environments/benchmarks/terminalbench_2/terminalbench2_env.py (modified, +3/-3)
  • environments/benchmarks/yc_bench/yc_bench_env.py (modified, +2/-2)
  • environments/hermes_base_env.py (modified, +4/-4)
  • environments/tool_context.py (modified, +4/-4)
  • hermes_agent/__init__.py (added, +0/-0)
  • hermes_agent/backends/__init__.py (added, +0/-0)
  • hermes_agent/backends/batch_runner.py (renamed, +4/-4)
  • hermes_agent/backends/mcp_serve.py (renamed, +1/-1)
  • hermes_agent/backends/mini_swe_runner.py (renamed, +3/-3)
  • hermes_agent/backends/model_tools.py (renamed, +13/-13)
  • hermes_agent/backends/toolset_distributions.py (renamed, +2/-2)
  • hermes_agent/backends/toolsets.py (renamed, +4/-4)
  • hermes_agent/cli/__init__.py (renamed, +0/-0)
  • hermes_agent/cli/auth.py (renamed, +9/-9)
  • hermes_agent/cli/auth_commands.py (renamed, +6/-6)
  • hermes_agent/cli/backup.py (renamed, +1/-1)
  • hermes_agent/cli/banner.py (renamed, +10/-10)
  • hermes_agent/cli/callbacks.py (renamed, +2/-2)
  • hermes_agent/cli/claw.py (renamed, +3/-3)
  • hermes_agent/cli/cli_output.py (renamed, +1/-1)
  • hermes_agent/cli/clipboard.py (renamed, +0/-0)
  • hermes_agent/cli/codex_models.py (renamed, +0/-0)
  • hermes_agent/cli/colors.py (renamed, +0/-0)
  • hermes_agent/cli/commands.py (renamed, +9/-9)
  • hermes_agent/cli/completion.py (renamed, +0/-0)
  • hermes_agent/cli/config.py (renamed, +3/-3)
  • hermes_agent/cli/copilot_auth.py (renamed, +0/-0)
  • hermes_agent/cli/cron.py (renamed, +8/-8)
  • hermes_agent/cli/curses_ui.py (renamed, +1/-1)
  • hermes_agent/cli/debug.py (renamed, +2/-2)
  • hermes_agent/cli/default_soul.py (renamed, +0/-0)
  • hermes_agent/cli/dingtalk_auth.py (renamed, +1/-1)
  • hermes_agent/cli/doctor.py (renamed, +18/-18)
  • hermes_agent/cli/dump.py (renamed, +5/-5)
  • hermes_agent/cli/env_loader.py (renamed, +1/-1)
  • hermes_agent/cli/gateway.py (renamed, +22/-22)
  • hermes_agent/cli/hooks.py (renamed, +4/-4)
  • hermes_agent/cli/logs.py (renamed, +0/-0)
  • hermes_agent/cli/main.py (renamed, +140/-140)
  • hermes_agent/cli/mcp_config.py (renamed, +10/-10)
  • hermes_agent/cli/memory_setup.py (renamed, +6/-6)
  • hermes_agent/cli/model_normalize.py (renamed, +2/-2)
  • hermes_agent/cli/model_switch.py (renamed, +16/-16)
  • hermes_agent/cli/models.py (renamed, +15/-15)
  • hermes_agent/cli/nous_subscription.py (renamed, +7/-7)
  • hermes_agent/cli/pairing.py (renamed, +1/-1)
  • hermes_agent/cli/platforms.py (renamed, +0/-0)
  • hermes_agent/cli/plugins.py (renamed, +6/-6)
  • hermes_agent/cli/plugins_cmd.py (renamed, +18/-18)
  • hermes_agent/cli/profiles.py (renamed, +3/-3)
  • hermes_agent/cli/providers.py (renamed, +0/-0)
  • hermes_agent/cli/runtime_provider.py (renamed, +6/-6)
  • hermes_agent/cli/setup.py (renamed, +30/-30)
  • hermes_agent/cli/skills_config.py (renamed, +6/-6)
  • hermes_agent/cli/skills_hub.py (renamed, +26/-26)
  • hermes_agent/cli/skin_engine.py (renamed, +1/-1)
  • hermes_agent/cli/status.py (renamed, +10/-10)
  • hermes_agent/cli/timeouts.py (renamed, +2/-2)
  • hermes_agent/cli/tips.py (renamed, +0/-0)
  • hermes_agent/cli/tools_config.py (renamed, +20/-20)
  • hermes_agent/cli/uninstall.py (renamed, +5/-5)
  • hermes_agent/cli/voice.py (renamed, +4/-4)
  • hermes_agent/cli/web_server.py (renamed, +26/-26)
  • hermes_agent/cli/webhook.py (renamed, +1/-1)
  • hermes_agent/cron/__init__.py (renamed, +2/-2)
  • hermes_agent/cron/jobs.py (renamed, +0/-0)
  • hermes_agent/cron/scheduler.py (renamed, +11/-11)
  • hermes_agent/gateway/__init__.py (renamed, +0/-0)
  • hermes_agent/gateway/builtin_hooks/__init__.py (renamed, +0/-0)
  • hermes_agent/gateway/builtin_hooks/boot_md.py (renamed, +0/-0)
  • hermes_agent/gateway/channel_directory.py (renamed, +3/-3)
  • hermes_agent/gateway/config.py (renamed, +2/-2)
  • hermes_agent/gateway/delivery.py (renamed, +1/-1)
  • hermes_agent/gateway/display_config.py (renamed, +0/-0)
  • hermes_agent/gateway/hooks.py (renamed, +2/-2)
  • hermes_agent/gateway/mirror.py (renamed, +1/-1)
  • hermes_agent/gateway/pairing.py (renamed, +0/-0)
  • hermes_agent/gateway/platforms/ADDING_A_PLATFORM.md (renamed, +1/-1)

Code Example

rg "^from (tools|model_tools|toolsets|toolset_distributions|mcp_serve)[\. ]" --type py  # should return 0
rg "^from tools\.environments" --type py   # should return 0
pytest
RAW_BUFFERClick to expand / collapse

Parent: #14182 Depends on: #14589 (PR 4)

Goal

Move all tools, extract backends from tools/environments/, and relocate 4 top-level modules (model_tools.py, toolsets.py, toolset_distributions.py, mcp_serve.py). ~88 files, the largest move.

What moves

Backends (promotion from tools/environments/)

  • tools/environments/*.py → hermes_agent/backends/*.py (11 files)

Top-level modules

  • model_tools.py → hermes_agent/tools/dispatch.py
  • toolsets.py → hermes_agent/tools/toolsets.py
  • toolset_distributions.py → hermes_agent/tools/distributions.py
  • mcp_serve.py → hermes_agent/tools/mcp/serve.py

Tool subgroupings

  • Browser tools → hermes_agent/tools/browser/ (8 files)
  • MCP tools → hermes_agent/tools/mcp/ (3 files)
  • Skills tools → hermes_agent/tools/skills/ (5 files)
  • Media tools → hermes_agent/tools/media/ (5 files)
  • File tools → hermes_agent/tools/files/ (3 files)
  • Security tools → hermes_agent/tools/security/ (4 files)
  • Flat tools → hermes_agent/tools/*.py (~30 files, gain prefix, drop _tool suffix)

__init__.py re-exports (included in this PR)

Re-exports for: tools/, tools/browser/, tools/mcp/, tools/skills/, tools/media/, tools/files/, tools/security/, backends/

Known gotchas

  • Tool registry discovery: discover_builtin_tools() must scan subdirectories. Import string changes from f"tools.{path.stem}" to f"hermes_agent.tools.{path.stem}".
  • skills_sync _get_bundled_dir(): Path traversal breaks after move — Path(__file__).parent.parent / "skills" resolves wrong. Must fix to account for new depth.
  • hermes-skills-sync console_script: Add to pyproject.toml + add main() wrapper to sync.py.

pyproject.toml changes

  • DELETE py-modules: model_tools, toolsets, toolset_distributions, mcp_serve
  • REMOVE tools, tools.* from packages.find include
  • ADD hermes-skills-sync = "hermes_agent.tools.skills.sync:main" to scripts

Verification

rg "^from (tools|model_tools|toolsets|toolset_distributions|mcp_serve)[\. ]" --type py  # should return 0
rg "^from tools\.environments" --type py   # should return 0
pytest

extent analysis

TL;DR

Update import statements and paths to reflect the new directory structure after relocating modules and tools.

Guidance

  • Review and update all import statements to use the new hermes_agent prefix instead of tools for relocated modules.
  • Modify the discover_builtin_tools() function to scan subdirectories correctly by updating the import string to f"hermes_agent.tools.{path.stem}".
  • Fix the skills_sync _get_bundled_dir() function to account for the new directory depth by updating the path traversal to Path(__file__).parent.parent / "hermes_agent" / "tools" / "skills".
  • Verify the changes by running the provided rg commands and pytest to ensure no import errors occur.

Example

# Before
from tools import model_tools

# After
from hermes_agent.tools import dispatch as model_tools

Notes

The relocation of modules and tools requires careful updating of import statements and paths to avoid breakage. The provided rg commands can help identify files that still use the old import statements.

Recommendation

Apply the workaround by manually updating the import statements and paths to reflect the new directory structure, as the issue implies that this is a necessary step for the relocation of modules and tools.

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#agent execution#callback error#memory management#API rate limit#retriever error

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Another batch ranked right after the header list — different links, same matching logic.

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