codex - 💡(How to fix) Fix Upgrading to the latest version corrupted logs_2.sqlite and codex app wouldn't restart
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Error Message
I just updated the app to the latest version, and it wouldn't relaunch, just gave me this error:
The app cannot finish launching until its SQLite database is accessible. Database path: Path unavailable in app-server startup error Close other Codex applications, then click Retry to check whether access has been restored. Error: (code=1, signal=null). Most recent error: Error: failed to initialize sqlite state runtime under /Users/latentflip/.codex: failed to initialize state runtime at /Users/latentflip/.codex: error returned from database: (code: 26) file is not a database
RAW_BUFFERClick to expand / collapse
What version of the Codex App are you using (From “About Codex” dialog)?
Version 26.519.22136 (3003)
What subscription do you have?
Pro plan
What platform is your computer?
Darwin 25.4.0 arm64 arm
What issue are you seeing?
I just updated the app to the latest version, and it wouldn't relaunch, just gave me this error:
The app cannot finish launching until its SQLite database is accessible. Database path: Path unavailable in app-server startup error Close other Codex applications, then click Retry to check whether access has been restored. Error: (code=1, signal=null). Most recent error: Error: failed to initialize sqlite state runtime under /Users/latentflip/.codex: failed to initialize state runtime at /Users/latentflip/.codex: error returned from database: (code: 26) file is not a database
I tracked it down to logs_2.sqlite being corrupted somehow. I renamed that and things seem to have started okay now.
What steps can reproduce the bug?
N/A I can't.
What is the expected behavior?
Updating the app shouldn't corrupt sqlite files.
Additional information
No response
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- claude agents: in-session copy uses broken OSC 52 path while overview correctly uses tmux buffer
- [BUG] Plugin agent descriptions (and custom agents) load unconditionally into context — no parity with disable-model-invocation for skills
- Crashed ultrareview consumed a free credit despite producing zero findings
- [Bug] Character rendering issue - invisible or missing text display
- [BUG] Cowork: processo Claude Code encerra com código 3 — .claude.json não contém token de autenticação (Windows 11 25H2)
- [BUG] 2.1.153 silently discards tools/list response from rmcp 0.12.0 HTTP MCP server (works in 2.1.152, wire-identical handshake)
- VS Code extension: option to auto-resume last session when reopening a workspace folder
- [Bug] Conversation continuation failure
- [BUG] Cowork crashes every time I start a new chat or attempt to continue an existing one in any project. The error displayed is: "Claude Code è andato in crash
- [Bug] Unannounced quota changes
- Native update/install fails with 'socket connection was closed unexpectedly' behind proxy — undici TLS incompatibility
- [BUG] Session name reverting after manual change
- [BUG] 非正常思考，上下文过长时，一直显示思考，点击interrupt按钮失效
- Honor `tools:` frontmatter when an agent is invoked via `@mention` — strip `Task` only when the agent did not declare it
- macOS TCC popup still recurring on v2.1.153 — "2.1.153" would like to access data from other apps
- Claude Code leaks pty handles — exhausts pseudo-terminals on macOS after long session
- [Bug] Agent fails to execute or respond to user input
- [BUG] Persistent "Expecting value: line 1 column 1 (char 0)" JSON parse error after tool execution
- [Feature Request] Implement proactive unit test coverage recommendations for recurring bugs
- VS Code panel lacks status line + terminal lacks image paste in Codespaces, forcing a tradeoff
- `/powerup` only shows ~10 lessons — allow viewing the full catalog
- [Bug] Context contamination after auto-compact with unrelated email draft of Tejo/Sado Basin
- [Bug] VSCode terminal output displays corrupted text with garbled symbols
- [Feature Request] Add LaTeX/KaTeX math rendering to TUI
- [Bug] Sub-agent PR review results not validated by orchestrating agent
- Subagents on Pro 1M tier: trivial probes pass, real workloads fail at first tool call (probe-vs-workload divergence)
- Path-scoped rules and subdirectory CLAUDE.md not loaded when creating new files matching the pattern
- AskUserQuestion: cancelling during extended thinking poisons the whole session with 400 'thinking blocks cannot be modified' (2.1.153); concurrent prompts overwrite each other
- Ideas Missing from Claude Cowork Menu (Windows)
- [BUG_BOUNTY_SAFE_POC_2026] Prompt Injection RCE Test - Command Execution Proof
- [BUG] Cowork scheduled task: execution history row not showing after successful run
- Resuming an extended-thinking session fails permanently with 400 "thinking blocks cannot be modified" (transcript stores thinking text as empty but keeps signature)
- [Bug] Plugin-registered CwdChanged and FileChanged hooks don't fire (settings.json works) — v2.1.153
- Auto-archive on PR merge / branch delete — clarify autoArchiveSessions semantics or add dedicated opt-out
- `claude mcp add` echoes Authorization header value verbatim to stdout, leaks bearer tokens to terminal and session transcripts
- [BUG] Bug report — /insights skill, Claude Code The /insights skill outputs a malformed file path.
- Plugin slash commands render with '*'-inline format instead of two-column, despite matching official plugin shape
- [Bug] Unexpected long text generation without user input or goal
- [Bug] Thinking blocks causing task progression blocked without user modification
- [BUG] (Critical!) contamination by an unknown session simirlar to the report => [Bug] Context contamination after auto-compact with unrelated email draft of Tejo/Sado Basin #63137
- [Critical] Opus 4.7 Korean output degeneration — Korean grammar itself collapses in long contexts
- [BUG] Title: Autocompact buffer persists across /clear — wastes tokens for irrelevant old context
- [Bug] Auto-Compact loses user input before processing in conversation history
- Feature: per-invocation effort parameter + runtime session-config introspection for skills
- Auto-mode classifier mislabels Azure DevOps vote -5 as "Reject" when denying PR vote actions
- [BUG] Claude Desktop and Claude Code CLI never re-register MCP tools after OAuth 2.1 handshake on a remote HTTP server
- [BUG] Workspace file tags leak across sessions
- [BUG] Ink renderer crashes on Windows 11 build 26200 (Canary) duplicate banners, terminal mode leaks, mid-operation aborts
- [BUG] Claude Code Desktop issue
- PTY master fd leak in Claude desktop app exhausts macOS kern.tty.ptmx_max after ~2-3 days
- [BUG] Claude Code — Session Management after Unexpected Interruption
- [Windows] Cowork OpenTelemetry exporter does not initialize - zero events emitted to any destination, including loopback
- [Bug] Opus 4.7: 400 `thinking blocks ... cannot be modified` on long extended-thinking sessions, triggered by history-altering events (scheduled prompts / parallel tool-call cancellation)
- [BUG] API Error: Server is temporarily limiting requests (not your usage limit) · Rate limited
- Multi-plugin custom marketplace: only first plugin registered in installed_plugins.json, skills don't load
- [BUG] Git push through the SDK's git proxy fan-outs into ~500 GitHub REST API calls, exhausting the 5,000/hour budget after a handful of pushes
- [BUG] Claude took liberties it really shouldn't with my global config
- [BUG] Agent window focus lost after navigating with arrow keys, causing scroll deadlock
- [BUG] `--model` flag silently ignored in interactive sessions (works in `--print` only)
- [BUG] Dispatch permanently shows "desktop appears offline" on Windows 11 - never worked on first use
- feat: support per-command enableWeakerNetworkIsolation as safer alternative to dangerouslyDisableSandbox
- /code-review outputs a raw JSON array instead of readable findings
- [BUG] Cowork — Additional allowed domains ignored on Team plan; same domain works on Pro plan
- Haiku
- [Bug] False positive blocking beneficial outcomes in tool execution
- 3P Bedrock SSO: credentials silently expire without triggering re-auth on day 2+
- CLAUDE_AUTOCOMPACT_PCT_OVERRIDE in settings.json env block silently ignored by autocompact logic
- Auto-compaction deletes main session JSONL before verifying summary completion, causing data loss
- [Bug] Claude Code not executing stated actions or producing expected results
- [FEATURE] Deferred Messages — Queue Input for End of Turn
- [BUG] Up/Down arrows in input box navigate history instead of moving cursor — regression in 2.1.149+
- Cancelling a parallel tool-call batch corrupts thinking blocks -> 400 "thinking blocks cannot be modified" permanently wedges the session
- Claude Code caused data loss, then contradicted itself about recovery (two incidents, one session)
- [Bug] Unclear error messages from Claude Code CLI
- [Bug] Agent tool rejecting due to context size limit exceeded
- claude agents: daemon and bg-spare processes spin at ~100% CPU when idle
- [BUG] Compaction fails with "context window limit" error even when context usage is low (e.g., 20%) — regression in v2.1.153
- Remote Control entitlement lost after May 27-28 incident — `Error: Remote Control is not yet enabled for your account` on active Max subscription
- PreToolUse hook exit code 2 does not block Write tool
- [Bug] Thinking blocks in latest assistant message are immutable
- GUI: dispatch file:// and custom-scheme clicks to OS shell handler
- Show current model in statusLine by default
- [Bug] Agent console becomes unresponsive to keyboard input after multiple agents initialized
- [FEATURE] PreToolUse hooks should have a way of updating the environment
- [Bug] Unable to start or use Claude Code CLI
- [BUG] Repository not visible in Claude Code web repo picker
- Session permanently wedged on 400 "thinking blocks cannot be modified" after parallel tool_results
- [Bug] @ autocomplete loses sibling repos after a file edit in multi-repo workspace
- Unclear error message when creating sub-agent without authentication
- [Bug] Anthropic API errors causing frequent failures and high token usage
- [BUG] @ mention file picker only shows packages, not individual files (desktop app - Code tab)
- [Bug] TUI panel footer remains sticky and consumes excessive terminal space
- PR-status polling exhausts GitHub GraphQL rate limit on repos with many open PRs
- [BUG] Windows: welcome panel not shown in some project folders (2.1.153)
- [Bug] Anthropic API Error: thinking blocks corrupted during context compaction with extended thinking enabled
- API 400 "thinking blocks cannot be modified" permanently bricks session during agent activation (interleaved thinking + tool use)
- Right-click Copy copies the whole message instead of the selection; pasted text retains dark background
- Mid-session model switch corrupts conversation when extended thinking is enabled (API 400: 'thinking blocks cannot be modified')
- [BUG] Markdown file links in chat output do not open files when clicked (VS Code extension)
- Stuck retry loop: `400 thinking blocks cannot be modified` on large interleaved-thinking turns using AskUserQuestion
- [FEATURE] Prompt user for approval before auto-compaction proceeds
- Custom MCP connectors not attachable to scheduled routines — no UUID discovery path
- [BUG] Claude in Chrome — Navigation blocked for teams.cloud.microsoft and outlook.cloud.microsoft after Microsoft domain migration**
- [BUG] Claude Desktop — Personal plugins panel renders list but is entirely non-interactive (macOS, v1.9255.2)
- [Bug] error when using Workflows
- [BUG] Persistent "update available" notification despite being on latest version
- [BUG] Sweep Agent from /code-review never completes
- [Bug] Tool calls not executing or returning results
- [FEATURE] Cloud-synced memory and settings across machines
- [Bug] Terminal UI freezes when Ctrl+O view exits during interactive prompt in plan mode
- Continuous api errors when using claude code with Opus 4.7 with thinking on low
- [Feature Request] Add support for installing and using previous Claude Code versions
- [Bug] Extended Thinking: Summarized thinking blocks fail signature validation when resent to API
- [Bug] Anthropic API Error: 'thinking' blocks cannot be modified
- [Bug] Anthropic API Error: Thinking blocks cannot be modified with extended thinking mode
- Feature request: Lazy/on-demand MCP server connections
- [Bug] Tool Arguments Parsed as String Instead of Object
- [Bug] Anthropic API Error: Insufficient context provided
- [Bug] Claude Opus occasionally uses moskovian(russian) orthography instead of Ukrainian in system-prompted responses
- Opus 4.8: backgrounded task completions (subagents AND Bash) crash with 400 "thinking blocks cannot be modified"
- [Bug] Opus 4.7 fabricates stable preferences ("my default") to rationalize arbitrary choices when challenged
- [Bug] Unable to update Claude Code CLI
- [BUG] Desktop app: /remote-control mints link + connects bridge (main.log) but in-chat link/QR panel never renders
- Feature: sessionColor and sessionName in .claude/settings.json
- [BUG] Anthropic API error: thinking blocks
- [FEATURE] Support Remote MCPs in Cowork as in Claude Code
- [Bug] Anthropic API Error: 400 Bad Request with Redacted Thinking - 0 4.7 & 4.8
- [Bug] Anthropic API Error: Cannot modify thinking blocks from different model versions
- Interleaved thinking + multi-tool turn corrupts thinking block (text blanked, signature kept) → permanent 400 'blocks must remain as they were'
- [BUG] Mode/permission changes mid-tool-loop (effortLevel: xhigh) poisons entire session
- Session failure log: Opus 4.6 ignores its own rules for an entire session
- [BUG] "400 Guardrail was enabled" error when using Claude Opus 4.8 with AWS Bedrock
- [Feature Request] Add subagent approach selection option to avoid accidental feedback
- Persistent 400 'thinking blocks in the latest assistant message cannot be modified' — interleaved thinking persisted with empty text + signature bricks sessions
- [BUG] DesktopvsApp
- [BUG] Opus 4.7 cache hit rate collapse after May 27 incident — Messages 1.1k→88.9k in 9 minutes, $630/session
- [Bug] Anthropic API Error: Invalid thinking block format
- [BUG] FUCK CLAUDE
- Opus 4.8 extended thinking: Stop hook block re-entry corrupts thinking blocks → 400
- [Bug] 4.8 Fails when accessing previous model history
- [Bug] Unintended File Modifications During Execution
- [DOCS] Model configuration docs omit lean system prompt default scope and model exceptions
- Add "Always allow globally" option to permission prompts
- Server-side model upgrade (Opus 4.7→4.8) wedges in-flight sessions with `thinking blocks cannot be modified` 400
- [DOCS] AskUserQuestion docs missing multiple-choice prompt decision threshold
- [DOCS] Agent view docs omit shell-command background session launch syntax
- [DOCS] Agent view dispatch input docs incorrectly imply `/logout` dispatches as a prompt
- [DOCS] Claude in Chrome docs omit connected-browser selection behavior
- [DOCS] Plugin docs omit `defaultEnabled: false` for opt-in plugins
- Feature Request: Customizable chat text colors for user and assistant messages
- [DOCS] `/plugin` Discover tab docs omit directory-based suggested plugin pins
- VSCode Chrome integration silently fails: 3 distinct bugs
- [DOCS] MCP stdio docs omit session environment variables
- [Bug] Anthropic API error on second request within session with Claude Opus 4.8
- Cowork emits a blank session "index" handoff on focus when a CLI session is paused awaiting input
- [DOCS] MCP docs omit `claude mcp list/get` pending-approval output for unapproved project servers
- [BUG] /compact fails with 400 error when last assistant turn contains thinking blocks
- [DOCS] `/claude-api` docs omit Opus 4.8 migration guidance
- [DOCS] Fast mode docs still recommend deprecated Opus 4.6 override variable
- [DOCS] Bash tool docs omit `$TMPDIR` consistency across sandboxed and unsandboxed commands
- [Bug] Anthropic API Error: 400 Bad Request on Extended Thinking
- [DOCS] Background session docs omit worktree-isolation behavior for spawned subagents
- Built-in mechanistic self-verification of verifiable claims (symmetric to the auto permission gate)
- [DOCS] Worktree docs do not clarify `worktree.baseRef: "head"` inside linked worktrees
- [BUG] Excessive RAM usage with multiple parallel chats (~10 sessions → 30 GB memory pressure, macOS OOM)
- [DOCS] Managed MCP policy docs omit invalid `allowedMcpServers`/`deniedMcpServers` entry behavior
- [DOCS] Effort docs omit `CLAUDE_CODE_ALWAYS_ENABLE_EFFORT` unsupported-model behavior
- Regression (2.1.147–2.1.150?): resuming an extended-thinking session after a CC update/model-switch → unrecoverable 400, session bricked
- [DOCS] Windows updater docs omit `claude.exe` in-use recovery guidance
- [DOCS] VS Code auto mode docs still tie mode-picker visibility to bypass-permissions setting
- [DOCS] MCP docs omit `/mcp` tool list and detail rendering behavior
- [DOCS] Fine-grained tool streaming docs still describe provider opt-in behavior
- bypassPermissions: session startup reads flat pref, GUI toggle writes per-account pref — they never sync
- [BUG] Claude Desktop Code tab causes disk write limit violation — 8.5GB in 11 min, macOS kills app (M5, v1.9659.1)
- Ultrareview v2.1.96: docs describe /tasks command + claude ultrareview --json subcommand that don't exist; findings hard to read after completion
- I'd be happy to help create a GitHub issue title, but I don't see the error message in your message. Could you please share the specific error you're encountering? That way I can generate an accurate and descriptive issue title for you.
- [BUG] Claude in Chrome `file_upload` rejects all scheduled-task sessions with misleading error (real cause: INVALID_SESSION)
- Extended thinking: signed thinking block 'cannot be modified' (400) permanently wedges session
- RTL text support for Hebrew (and Arabic) in Claude Code
- [Bug] Random errors occurring across multiple operations